Related genomes of genome UC087 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC087 - Candidatus Pacebacteria bacterium LF-bin-483

Proteome version: Genbank; ASM1437669v1; GCA_014376695.1; 10-FEB-2021 with 904 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	STRSW	Streptomyces scabiei (strain 87.22)	109
2	PSEBN	Pseudomonas brassicacearum (strain NFM421)	109
3	GLOC7	Gloeothece citriformis (strain PCC 7424)	108
4	AMYMS	Amycolatopsis mediterranei (strain S699)	108
5	AMYMU	Amycolatopsis mediterranei (strain U-32)	108
6	PARXL	Paraburkholderia xenovorans (strain LB400)	107
7	STRGG	Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)	106
8	PSEPW	Pseudomonas putida (strain W619)	106
9	STRRD	Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)	105
10	ACTM4	Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NBRC 102363 / NCIMB 12654 / NRRL B-3342 / UNCC 431)	105

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	2
2	MEGSC	Megaselia scalaris	5
3	TRYCI	Trypanosoma congolense (strain IL3000)	5
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	6
5	ENTBH	Enterocytozoon bieneusi (strain H348)	7
6	VITCO	Vittaforma corneae (strain ATCC 50505)	7
7	NANGC	Nannochloropsis gaditana (strain CCMP526)	8
8	ENTNP	Entamoeba nuttalli (strain P19)	8
9	UC125	Thermoplasmata archaeon B1_G16	9
10	SYMMI	Symbiodinium microadriaticum	9