Related genomes of genome UC087 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC087 - Candidatus Pacebacteria bacterium LF-bin-483

Proteome version: Genbank; ASM1437669v1; GCA_014376695.1; 10-FEB-2021 with 904 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CHIPD	Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / LMG 13176 / NBRC 15968 / NCIMB 11800 / UQM 2034)	105
2	BACC4	Bacillus cereus (strain B4264)	104
3	BACHK	Bacillus thuringiensis subsp. konkukian (strain 97-27)	104
4	STRGG	Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)	104
5	BACC3	Bacillus cereus (strain 03BB102)	103
6	BACT1	Bacillus thuringiensis (strain BMB171)	103
7	BACCZ	Bacillus cereus (strain ZK / E33L)	103
8	PRIM1	Priestia megaterium (strain ATCC 12872 / QMB1551)	103
9	BACT0	Bacillus thuringiensis subsp. finitimus (strain YBT-020)	103
10	BACAH	Bacillus thuringiensis (strain Al Hakam)	102

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	2
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	5
3	TRYCI	Trypanosoma congolense (strain IL3000)	5
4	MEGSC	Megaselia scalaris	7
5	NANGC	Nannochloropsis gaditana (strain CCMP526)	8
6	SYMMI	Symbiodinium microadriaticum	8
7	UC126	archaeon B48_G17	9
8	ENTBH	Enterocytozoon bieneusi (strain H348)	9
9	UC125	Thermoplasmata archaeon B1_G16	10
10	VITCO	Vittaforma corneae (strain ATCC 50505)	11