Related genomes of genome UC095 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC095 - candidate division WOR-3 bacterium Ch92

Proteome version: Genbank; ASM1317793v1; GCA_013177935.1; 27-MAY-2020 with 1696 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC114	candidate division TA06 bacterium E44_bin18	635
2	UC115	Candidatus Cloacimonetes bacterium E29_bin43	600
3	UC178	candidate division Zixibacteria bacterium SM23_81	582
4	UC169	Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 none	578
5	UC048	Candidatus Eisenbacteria bacterium M_DeepCast_400m_m1_028	574
6	UC028	bacterium Zod_Metabat.886	524
7	UC033	bacterium Zod_Metabat.1116	519
8	UC037	Candidatus Eisenbacteria bacterium Zod_Metabat.137	513
9	CALAY	Caldithrix abyssi	511
10	UC102	candidate division Zixibacteria bacterium A-C077	508

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	14
2	RALSL	Ralstonia solanacearum	17
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	VITCO	Vittaforma corneae (strain ATCC 50505)	19
5	ENTBH	Enterocytozoon bieneusi (strain H348)	21
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	21
7	TRAHO	Trachipleistophora hominis	22
8	MEGSC	Megaselia scalaris	24
9	NEMP3	Nematocida parisii (strain ERTm3)	27
10	SYMMI	Symbiodinium microadriaticum	29