Related genomes of genome UC102 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC102 - candidate division Zixibacteria bacterium A-C077

Proteome version: Genbank; ASM1177398v1; GCA_011773985.1; 30-MAR-2020 with 2562 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC114	candidate division TA06 bacterium E44_bin18	665
2	UC085	Candidatus Coatesbacteria bacterium Bin_172	662
3	UC028	bacterium Zod_Metabat.886	614
4	UC178	candidate division Zixibacteria bacterium SM23_81	585
5	UC169	Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 none	578
6	U03MY	Myxococcales bacterium AS27yjCOA_30	577
7	UC115	Candidatus Cloacimonetes bacterium E29_bin43	575
8	UC067	Candidatus Schekmanbacteria bacterium NC_groundwater_1829_Pr3_B-0.1um_41_52	565
9	UC142	bacterium BMS3Bbin03	564
10	UC037	Candidatus Eisenbacteria bacterium Zod_Metabat.137	559

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	13
2	VITCO	Vittaforma corneae (strain ATCC 50505)	14
3	TRYCI	Trypanosoma congolense (strain IL3000)	15
4	ENTBH	Enterocytozoon bieneusi (strain H348)	15
5	NEMP3	Nematocida parisii (strain ERTm3)	17
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	18
7	TRAHO	Trachipleistophora hominis	18
8	SPRLO	Spraguea lophii (strain 42_110)	19
9	NOSCE	Nosema ceranae (strain BRL01)	20
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20