Related genomes of genome UC111 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC111 - Candidatus Aerophobetes bacterium Ae_b3b

Proteome version: Genbank; ASM522308v1; GCA_005223085.1; 07-MAY-2019 with 2003 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ATRLM	Atribacter laminatus	602
2	UC182	Candidatus Vecturithrix granuli none	586
3	HYDET	Hydrogenispora ethanolica	563
4	U03SP	Spirochaetes bacterium Zod_Metabat.958	507
5	UC084	Candidatus Poribacteria bacterium Bin_402	486
6	DESAL	Desulfatibacillum aliphaticivorans	485
7	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	485
8	U03AM	Armatimonadetes bacterium Ch1	474
9	SINMM	Sinorhizobium meliloti (strain SM11)	470
10	UC098	bacterium AS04akNAM_5	466

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	10
2	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	12
3	TRYCI	Trypanosoma congolense (strain IL3000)	13
4	TRAHO	Trachipleistophora hominis	13
5	EDHAE	Edhazardia aedis (strain USNM 41457)	14
6	VITCO	Vittaforma corneae (strain ATCC 50505)	14
7	MEGSC	Megaselia scalaris	15
8	SPRLO	Spraguea lophii (strain 42_110)	16
9	NEMP3	Nematocida parisii (strain ERTm3)	17
10	NOSCE	Nosema ceranae (strain BRL01)	17