Related genomes of genome UC147 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC147 - bacterium CG_4_10_14_0_2_um_filter_33_32

Proteome version: Genbank; ASM279273v1; GCA_002792735.1; 16-NOV-2017 with 968 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	349
2	UC180	Berkelbacteria bacterium GW2011_GWE1_39_12 none	268
3	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	265
4	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	259
5	CLOBM	Clostridium botulinum (strain Loch Maree / Type A3)	249
6	DESHY	Desulfitobacterium hafniense (strain Y51)	249
7	CLOBL	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	248
8	CLOBJ	Clostridium botulinum (strain Kyoto / Type A2)	248
9	CLOBH	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	248
10	CLOB1	Clostridium botulinum (strain ATCC 19397 / Type A)	246

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	6
2	TRYCI	Trypanosoma congolense (strain IL3000)	6
3	EDHAE	Edhazardia aedis (strain USNM 41457)	8
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	9
5	MEGSC	Megaselia scalaris	9
6	VITCO	Vittaforma corneae (strain ATCC 50505)	11
7	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	11
8	ENTBH	Enterocytozoon bieneusi (strain H348)	11
9	TRAHO	Trachipleistophora hominis	12
10	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	12