Related genomes of genome UC178 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC178 - candidate division Zixibacteria bacterium SM23_81

Proteome version: Genbank; ASM130401v1; GCA_001304015.1; 30-SEP-2015 with 2298 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC114	candidate division TA06 bacterium E44_bin18	738
2	UC142	bacterium BMS3Bbin03	719
3	CALAY	Caldithrix abyssi	717
4	UC033	bacterium Zod_Metabat.1116	703
5	UC107	Calditrichaeota bacterium CLD2	686
6	UC115	Candidatus Cloacimonetes bacterium E29_bin43	684
7	UC037	Candidatus Eisenbacteria bacterium Zod_Metabat.137	680
8	UC048	Candidatus Eisenbacteria bacterium M_DeepCast_400m_m1_028	675
9	UC185	candidate division Zixibacteria bacterium RBG-1 none	644
10	UC028	bacterium Zod_Metabat.886	637

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	17
2	VITCO	Vittaforma corneae (strain ATCC 50505)	18
3	ENTBH	Enterocytozoon bieneusi (strain H348)	20
4	TRYCI	Trypanosoma congolense (strain IL3000)	20
5	EDHAE	Edhazardia aedis (strain USNM 41457)	21
6	NEMP3	Nematocida parisii (strain ERTm3)	24
7	MEGSC	Megaselia scalaris	26
8	TRAHO	Trachipleistophora hominis	27
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	28
10	SPRLO	Spraguea lophii (strain 42_110)	28