Related genomes of genome UC182 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC182 - Candidatus Vecturithrix granuli none

Proteome version: Genbank; ASM73953v1; GCA_000739535.1; 27-FEB-2015 with 7048 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	HYDET	Hydrogenispora ethanolica	1076
2	SEDSS	Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)	1045
3	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	954
4	DESAL	Desulfatibacillum aliphaticivorans	953
5	U03SP	Spirochaetes bacterium Zod_Metabat.958	942
6	SINMB	Sinorhizobium meliloti (strain BL225C)	939
7	UC183	Candidatus Entotheonella factor none	935
8	RHIME	Rhizobium meliloti (strain 1021)	933
9	DESAH	Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2)	929
10	SINMM	Sinorhizobium meliloti (strain SM11)	924

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	21
2	ENTBH	Enterocytozoon bieneusi (strain H348)	23
3	TRAHO	Trachipleistophora hominis	23
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27
6	VITCO	Vittaforma corneae (strain ATCC 50505)	27
7	VAVCU	Vavraia culicis (isolate floridensis)	28
8	SPRLO	Spraguea lophii (strain 42_110)	30
9	NEMP3	Nematocida parisii (strain ERTm3)	31
10	NOSCE	Nosema ceranae (strain BRL01)	32