Related genomes of genome UC184 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC184 - candidate division WWE3 bacterium RAAC2_WWE3_1

Proteome version: Genbank; ASM50383v1; GCA_000503835.1; 19-SEP-2017 with 871 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC171	candidate division CPR3 bacterium GWF2_35_18 none	222
2	UC094	candidate division WWE3 bacterium W9_Combined_metabat1_117	218
3	UC061	Candidatus Roizmanbacteria bacterium Kalu_18-Q3-R12-55_MAXAC.194_uni	206
4	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	182
5	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	182
6	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	180
7	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	179
8	UC180	Berkelbacteria bacterium GW2011_GWE1_39_12 none	171
9	CLOAE	Clostridium acetobutylicum (strain EA 2018)	170
10	UC073	Candidatus Andersenbacteria bacterium NC_groundwater_813_Pr1_B-0.1um_46_36	170

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	1
2	MEGSC	Megaselia scalaris	4
3	TRYCI	Trypanosoma congolense (strain IL3000)	6
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	7
5	NANGC	Nannochloropsis gaditana (strain CCMP526)	8
6	EIMMA	Eimeria maxima	10
7	TRAHO	Trachipleistophora hominis	11
8	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	12
9	PHYAT	Physella acuta	12
10	GIAIA	Giardia intestinalis (strain P15)	12